PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013641.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 403aa    MW: 44717.1 Da    PI: 7.1939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013641.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.5e-142062648
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + Ede+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
      Aco013641.1 20 PKEDEKLLKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 62
                     67***************************************97 PP
2Myb_DNA-binding482.8e-1568110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k++w+
      Aco013641.1  68 RGSFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNFWN 110
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1171462IPR017930Myb domain
SMARTSM007172.0E-61464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-202065IPR009057Homeodomain-like
PfamPF002492.3E-112062IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-2520109IPR009057Homeodomain-like
CDDcd001674.56E-92062No hitNo description
PROSITE profilePS5129425.20263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2566117IPR009057Homeodomain-like
SMARTSM007175.2E-1567115IPR001005SANT/Myb domain
PfamPF002493.3E-1468111IPR001005SANT/Myb domain
CDDcd001677.09E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVAPTIKAPN TNSNRVIRHP KEDEKLLKHI TKYGHGCWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGS FSQQEENLII ELHAVLGNRW SQIAAQLPGR TDNEIKNFWN SSIKKKLRQR  120
GIDPNTHKPI AETEGNDDIA PTNSEKTSTS GETKLAGPAV AHLSPAIPDA APTLMSVENT  180
NHIEKSRPKN SMAPAKELFL DCVASQTASI GLSMNQNLPL WFNQNCRLFD GSAEFGCNTV  240
PNMAPTLSSS IFANSVAFKS MMHLPQEKTL QDFQYLEAGN SGNNSASSGN SSNIHELQSS  300
SYLYDSGIFP WSDLVPNKED QMHIVGEPED LKWSEYLNGI IPMPTNIQSQ IQSQAHGFYG  360
NIKEESQFSI TGFSSCHQNQ QLQHGDMYGK DFHRVSTSFD QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-272111713108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678104e-89KM667810.1 Ananas bracteatus clone 53256a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102034.10.0transcription factor MYB86-like
TrEMBLA0A2H3WYL41e-153A0A2H3WYL4_PHODC; transcription factor MYB61
STRINGXP_008775654.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-75myb domain protein 61