PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013399.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ZF-HD

Protein Properties

Length: 198aa MW: 21789.2 Da PI: 7.7283

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013399.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	81	1.5e-25	3	55	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eClkNhAa+lG++a DGC+E++++ e ++ +l CaACgCHR+FHR+ v+e Aco013399.1 3 EIYRECLKNHAAKLGTYAADGCCEYISD---EVQPGTLYCAACGCHRSFHRKGVAE 55 57**********************98...6789***************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.4E-21	4	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-21	5	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.338	5	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-15	5	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.1E-21	81	154	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.19E-10	83	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-20	89	154	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MREIYRECLK NHAAKLGTYA ADGCCEYISD EVQPGTLYCA ACGCHRSFHR KGVAEHHTSG 60 SDTTAVATKY LQLRGQRATE EDLREGGSKR RTRTRFTQEQ KARMARFAGS IGWKMPRREG 120 GAKPPREEGD DVDRFCCEVG VTRKSFKVWM HNHKGGGGGA TVMDRNSPAC KDSDEGENTN 180 EEEGQGGDMI HSIDVGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-11	88	157	16	76	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104090.1	1e-146	zinc-finger homeodomain protein 11-like
Swissprot	A2XLF4	1e-45	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	1e-45	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A0A199UR45	8e-53	A0A199UR45_ANACO; Zinc-finger homeodomain protein 11
STRING	Sb01g010020.1	4e-48	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-31	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Aco013399.1