PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013365.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 294aa    MW: 31843.9 Da    PI: 6.1278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013365.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-11148194455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ + f  L  ++P +     kK +Ka+ L  A++++k+L+
  Aco013365.1 148 EHVIAERKRREKLAQQFIALSAMIPDL-----KKTDKASLLGGAIDHLKQLE 194
                  699************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.897144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8148194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14148206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-10149198No hitNo description
SuperFamilySSF474592.36E-14149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
VIIISQESEE PTFMYQPHDM GSMDPLSLVD EENSPFPVEN YAPDYCFDPS FSGSSSSPTS  60
LRFNPSMNAV KTEGPPTAAA SAASASSNIL SFGGDDHLLR PILNSDHHSG AATMYSHGVV  120
GKDETIDFQQ RERSSKGSSR ASYCTAQEHV IAERKRREKL AQQFIALSAM IPDLKKTDKA  180
SLLGGAIDHL KQLEEKVKVL EEQATRKTTE STILLKNSHA ISNASSADHE TLPKVEATLQ  240
GKTLLLRIHC EKRKGVLVMI LSEIEKMSLT VVNTSVVPFE GSSLHITATA QAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152157ERKRRE
2153158RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104981.10.0transcription factor NAI1-like isoform X1
TrEMBLA0A199UZE00.0A0A199UZE0_ANACO; Transcription factor NAI1 (Fragment)
STRINGXP_008785755.14e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.11e-34bHLH family protein