PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco013347.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 324aa MW: 35468.9 Da PI: 7.0617

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco013347.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.8e-11	147	195	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka++L + ++Y++sLq Aco013347.1 147 NSHSLAERVRREKISERMRLLQDLVPGC----SKITGKAMMLDEIINYVQSLQ 195 58************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.14E-12	142	199	No hit	No description
SuperFamily	SSF47459	5.23E-17	142	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-17	144	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.491	144	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	147	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-10	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MQSDQIVGAS SVNTPCSSAR FGDQYFGQAM DFNGPSGFSK YNNSATQQRL QFYNPSADFS 60 TGSKRSNDKN FKGKKRKGAV DGVSIYSETP QDRIQQMEVK MESLSNAVEK DEIKLHSGNQ 120 AKESTFDGDA SKDDYIHVRA KRGQATNSHS LAERVRREKI SERMRLLQDL VPGCSKITGK 180 AMMLDEIINY VQSLQRQVEF LSMKLAAVNP EMSFNLEQIL TKDILQSRDM RPALLGSGLG 240 LSNVQSSFHG SSPNGIVLPE MLFGIQNPGN TPATSIPQFP TISQIPGLWD DELQNIIHMG 300 FIPSAVTGGT ENSNVSGSMK VVE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105183.1	0.0	transcription factor bHLH74-like
Swissprot	Q6NKN9	2e-57	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A3Q0HXH4	1e-88	A0A3Q0HXH4_PHODC; transcription factor bHLH74-like
STRING	XP_008785728.1	3e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	8e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco013347.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]