PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013297.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 287aa    MW: 31889.8 Da    PI: 4.8009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013297.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-0929522347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                      W+ Ia++++ gRt++++k++w+++
      Aco013297.1 29 KWAHIASHLP-GRTDNEIKNYWNSW 52
                     4*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.86E-82659IPR009057Homeodomain-like
PfamPF002492.4E-72752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-112857IPR009057Homeodomain-like
PROSITE profilePS500906.2952953IPR017877Myb-like domain
CDDcd001671.11E-62953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRLLGIGLKH AIHTVPFIVL SFCSSCRFKW AHIASHLPGR TDNEIKNYWN SWIKKKLRKP  60
TTPSSTSPPG AELVQPGFCT ADHLNAVINQ SLTPKSAPET MFLAHCPLFM FDTAMGNSRE  120
CSSATTARDD LVQEVAALTS EMWNPNPNHH NQELPSLLTF ASSIESSYLP PLVDGMGNMV  180
AMEEEEGDTN GEHFEKQGDL MSEWVESQHD YNPANLLIWD QVQGTMEGEG LPNAPSTMNA  240
LTSSFEQKFS ETRLTEISKS EPLDNTQPCF DIRTECYPTA HTWVSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114651.10.0transcription factor MYB80
TrEMBLA0A199VTP00.0A0A199VTP0_ANACO; Transcription factor MYB86
STRINGXP_008797178.18e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-16myb domain protein 103