PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013248.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 608aa    MW: 64261.6 Da    PI: 7.2718
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013248.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.46.1e-26525599176
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                  rW+k ev aLi +r ++ee++++  lk+plW+evs++m++ gf+rs+k+Ckekwen+nk+++k k++ k+r +++ 
  Aco013248.1 525 RWPKAEVEALIGVRWRLEEKFQEPGLKGPLWDEVSAQMAAIGFRRSAKRCKEKWENINKYFRKAKDSGKRR-PPHA 599
                  8******************************************************************9997.5544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-17524596No hitNo description
CDDcd122034.58E-26524589No hitNo description
PROSITE profilePS500906.609525582IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MQSGYGGGAA AAGGGGVSHE IQQFMAAAAA AAMAEGGSGG GGGGASLFSM STAAAEMSPP  60
PIKYQHLIHG HHLHHHHQIV PQQQQQQQFP PPMVMPVPMA AHMLQFHPIP FTQQLLQQSS  120
SSSSSHHHFQ LFHHSPPPPP PPPPQTQNPA ARLIFPPPHH HRRQFPIGGD AREPEPAAAV  180
AEINSPHGGC SGGGGGREFL AGMMNFKLGV DDCGREGGAD DDDDEDAAAA ERGGIHGWHH  240
EEESAIKEPT WRPLDIDYIY RNGKRNKHKE PESPPPPPPS LAAAEFYKQS EETPIAAAAA  300
DDDEADESGH GRAPTGGSNY KLFSELEAIY KPGSSSGGGG IAEANQTGSG SALTGDENSL  360
IPASNAAFGA AAVLSEMSAG GEAPTEKQPQ QINVSSGGGG GGGMRRSKRK RRQKQQQLAA  420
VAAFFETLVR QLMEHQESLH RRGATASARA ATTRAAARAR DRQLSAAREA AVVAFLEKIS  480
GQSLHLPPAA ADEAATAITT TMAAKIPITA PTDSDVIGAE TGGRRWPKAE VEALIGVRWR  540
LEEKFQEPGL KGPLWDEVSA QMAAIGFRRS AKRCKEKWEN INKYFRKAKD SGKRRPPHAK  600
TLGTLYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403410MRRSKRKR
2404410RRSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6668891e-148KM666889.1 Ananas bracteatus clone 52291a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199UNM60.0A0A199UNM6_ANACO; Trihelix transcription factor GT-2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-28Trihelix family protein