PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco013229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24130.7 Da PI: 9.5311 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.5 | 9.5e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ rqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+g+lye+++ Aco013229.1 10 RIENTASRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSSRGHLYEFAT 59 8***********************************************86 PP | |||||||
2 | K-box | 83.1 | 6e-28 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +k+++ + ++++ e a+L ++ie L+ +R+l+Ge++e++s +eL++Le qLeksl+++R++K+++ll++i+el+++e+++ +en Lr+k Aco013229.1 79 TKRAAVESIQHWKSETARLANKIEVLEAHKRKLMGEGIEPCSTEELRELEAQLEKSLSNVRATKQKMLLDHISELKEQERMALRENAVLREKC 171 455677789*********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.6E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.539 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.55E-40 | 2 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-31 | 3 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-26 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.705 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MARGKREMRR IENTASRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSS RGHLYEFATS 60 SVQKTIDRYK MHMKEPGSTK RAAVESIQHW KSETARLANK IEVLEAHKRK LMGEGIEPCS 120 TEELRELEAQ LEKSLSNVRA TKQKMLLDHI SELKEQERMA LRENAVLREK CKVEPLLQLT 180 IPEGINTSDQ ASPNVEVETE LIIGRPGTSD SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-18 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114824.1 | 1e-154 | MADS-box transcription factor 50-like | ||||
Swissprot | Q9XJ60 | 5e-69 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A199VZ80 | 1e-105 | A0A199VZ80_ANACO; MADS-box transcription factor 50 (Fragment) | ||||
STRING | GSMUA_Achr2P04340_001 | 6e-78 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-66 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Aco013229.1 |