PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013228.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 697aa    MW: 76179.1 Da    PI: 5.8777
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013228.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
      Aco013228.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-171874IPR009057Homeodomain-like
PROSITE profilePS5129420.1731973IPR017930Myb domain
TIGRFAMsTIGR015576.3E-172271IPR006447Myb domain, plants
SMARTSM007171.1E-122371IPR001005SANT/Myb domain
PfamPF002492.8E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-82464IPR009057Homeodomain-like
CDDcd001671.29E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEANSSGEEF IVKVRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEAMTKG VPPGQAHDID IPPPRPKRKP NSPYPRKSCA LSPLSSTGEV  120
VNEKSNYSFS PLSAGNREVS QKESDAPSEP QNKEMSENGS CSEVLNLFRE APCVSMSSIN  180
KGSAYNHSAY KGFDPMMKES KERSLLEKTP VLTETNEKPD AGTDQETERL KGIRISSDAN  240
CPKNEGVNDQ GSPPVETIQV DQINNPMAEQ AGGAHGESVN PSTNHSLSTG PKLHENSTMP  300
SFHHNYPIFS PFPQCHNQQD AYRSYLNISS TFSNLLVSTL LQNPAIHTVA RFAASFWPSP  360
EINASVDSNP ETLASQNLAS LATATVAAAS AWWATQGLLP LFPPTPLGFA FPPPPTTTGL  420
PIVGDTRTSE KESGDGIYQG PSKDQEAPNL DQSEGLKQYP SSKPSLSSLS DSDESGREEE  480
KRSLCAELKA SRTSKSKPSS ANEGTNNADS LRNNKKQDRS SCGSNTPSSS DVETDMPEND  540
EQINDNSKQD YFGNSLAGDT NYRRFRSSGS TIDSWKEVSE EGRLAFQALF RRGVLPQSFS  600
PPPAEEEGVK CKGGEETTLP PVNNTGLTMD TLIRSNESGE LGSLLTSGFL QAKLKARRTG  660
FKPYKRCSAE AKESRATAGE EAINNKRIRL EGETST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7501510.0AY750151.1 Ananas comosus circadian clock-associated protein (CCA1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114596.10.0protein LHY-like isoform X3
TrEMBLA0A199VZX40.0A0A199VZX4_ANACO; Protein LHY
STRINGOS08T0157600-011e-180(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-50circadian clock associated 1