PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012714.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 316aa    MW: 35171.1 Da    PI: 6.5863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012714.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09229270955
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  Aco012714.1 229 AKVRRERISERLKILQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 270
                  589*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12221278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-11222274No hitNo description
SuperFamilySSF474591.13E-13222281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6230270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAFAKEQAPK ESTRPHSIYD TISLELFGYK GHRHTSSLLN EVSYCEGLPP ILADTSNSSS  60
SASFALGVLN SPPQEAHSGL SSSKTKSDSC WAYSTSSVLS FDLGDQFPHS SYANHNDQEE  120
ECDVWINAMD QNHTMNQSSF EYSWIVHDHS YETRSAAKDD AYGEEQFALL HPSSISMNGA  180
QEVSRQDKLS QKRPYAGDHE MPTPKKQRGI NRNTKTKPTP PKDPQSVAAK VRRERISERL  240
KILQDLVPNG TKVDLVTMLE KAINYVKFLQ LQVKVLSTDE FWPAQGGKVP DISQVREAID  300
AILCSQRDMS SNSKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089058.10.0transcription factor bHLH83-like
TrEMBLA0A199UF177e-91A0A199UF17_ANACO; Transcription factor bHLH83
STRINGGSMUA_Achr10P20230_0011e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-51ROOT HAIR DEFECTIVE6