PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012600.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 388aa MW: 43326.9 Da PI: 7.91

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	17	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL++kv + +++ +++ evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg Aco012600.1 17 LPPGFRFHPTDEEIITNYLTNKVVSPSFTS-RAMGEVDLNKCEPWDLPSKAKMGEKEWYFFCQRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKGV 113 79***********************999.88***********99999***************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgek++Wvmhe+rle Aco012600.1 114 LVGMKKTLVFYKGRAPKGEKSNWVMHEFRLE 144 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-62	15	169	IPR003441	NAC domain
PROSITE profile	PS51005	58.378	17	169	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	18	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MVEVPLVHQG EDYCMDLPPG FRFHPTDEEI ITNYLTNKVV SPSFTSRAMG EVDLNKCEPW 60 DLPSKAKMGE KEWYFFCQRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KGVLVGMKKT 120 LVFYKGRAPK GEKSNWVMHE FRLEGKSIIF SDRKIVPKDE WVVCRVHHKG INGSKKNQIG 180 ELIRVNSSSQ EDLMDYLNFN SMNTPTSNFS ISTTTSTPTT TTTTTTTPPH FPPTMLGLED 240 PDPSTHKSSA LLIPYNNFNS YTNVQGKPPM TFPPPQDPSS LLLQGSPTMG YLHQEEAIMK 300 TLIGSKGNCK VEQLSNSDGT GFRIVDGDHS CAEYLSVMPK NSSSGSYGHQ PYNFGHHLNG 360 SSTGPLVADF DNQYWSHIGN HKGGLFM*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MVEVPLVHQG EDYCMDLPPG FRFHPTDEEI ITNYLTNKVV SPSFTSRAMG EVDLNKCEPW  60
DLPSKAKMGE KEWYFFCQRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KGVLVGMKKT  120
LVFYKGRAPK GEKSNWVMHE FRLEGKSIIF SDRKIVPKDE WVVCRVHHKG INGSKKNQIG  180
ELIRVNSSSQ EDLMDYLNFN SMNTPTSNFS ISTTTSTPTT TTTTTTTPPH FPPTMLGLED  240
PDPSTHKSSA LLIPYNNFNS YTNVQGKPPM TFPPPQDPSS LLLQGSPTMG YLHQEEAIMK  300
TLIGSKGNCK VEQLSNSDGT GFRIVDGDHS CAEYLSVMPK NSSSGSYGHQ PYNFGHHLNG  360
SSTGPLVADF DNQYWSHIGN HKGGLFM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	15	175	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	15	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	15	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	15	175	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-52	15	175	15	171	NAC domain-containing protein 19
4dul_B	1e-52	15	175	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020101345.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FK44	4e-88	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A199UHF2	0.0	A0A199UHF2_ANACO; NAC domain-containing protein 100
STRING	XP_008787998.1	1e-123	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-90	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Aco012600.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]