PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco012482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 18859.3 Da PI: 6.5143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 49 | 90 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri ++f +Lr+l+P +Kl+ +++L +A++Y+k L+ Aco012482.1 49 ARARRHRISDRFRTLRSLVPGG-----TKLDTVSMLDEAIHYVKFLE 90 699*****************87.....8****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.707 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 45 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 46 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-12 | 46 | 93 | No hit | No description |
SMART | SM00353 | 3.0E-13 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-8 | 50 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDTFGDHRNN TNLNQSISEK RRGVAGGGSR VGSSRTRVKL STDPQSVAAR ARRHRISDRF 60 RTLRSLVPGG TKLDTVSMLD EAIHYVKFLE AQLWLLRQVE LSLPADFAAA QMSGDFDNNH 120 EFEMTQQLFC DSVQLQPPPP SPSPSPSLPP LPTCFIQGEE EMILDLMYS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102047.1 | 1e-114 | pyruvate decarboxylase 1-like | ||||
TrEMBL | A0A199VCJ7 | 1e-122 | A0A199VCJ7_ANACO; Transcription factor LAX PANICLE | ||||
STRING | Aquca_045_00179.1 | 5e-31 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-26 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | Aco012482.1 |