PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012350.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 360aa MW: 39565.6 Da PI: 4.5621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32	2.3e-10	284	324	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Aco012350.1 284 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 324 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.224	274	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-14	274	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-12	279	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-11	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.59E-12	283	328	No hit	No description
Pfam	PF00010	1.1E-7	284	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MENEGLALEA TWSSFEESEI MAQLLGGAVA TNYFPGDQEQ EPTNGMHLMF WPNYDSDSNF 60 SSPTDVNYNS FHWPQSISTP CISTSTGSFL LSNPCYGGGC YLGDTNLVPH NTTSSFDVDF 120 NRRYCDLPSM TEEACDDNEL GLSIANQMRP AVFADEPSHA AKRKFGLGDN EKPIEDVKDD 180 DTSSLVPRKK ARVTMGNVSI QAQERNKNAD TKKPLKNEEN GNADFHGQSS SSCSSEDDSS 240 GSQEQMEGGG NTSSRSKKSE TTSVTGKTRA GRGSATDPQS LYARKRRERI NERLRILQNL 300 VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDELWMYAP LAYNGICISP DLKISPPQL*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MENEGLALEA TWSSFEESEI MAQLLGGAVA TNYFPGDQEQ EPTNGMHLMF WPNYDSDSNF  60
SSPTDVNYNS FHWPQSISTP CISTSTGSFL LSNPCYGGGC YLGDTNLVPH NTTSSFDVDF  120
NRRYCDLPSM TEEACDDNEL GLSIANQMRP AVFADEPSHA AKRKFGLGDN EKPIEDVKDD  180
DTSSLVPRKK ARVTMGNVSI QAQERNKNAD TKKPLKNEEN GNADFHGQSS SSCSSEDDSS  240
GSQEQMEGGG NTSSRSKKSE TTSVTGKTRA GRGSATDPQS LYARKRRERI NERLRILQNL  300
VPNGTKVDIS TMLEEAVQYV KFLQLQIKLL SSDELWMYAP LAYNGICISP DLKISPPQL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104186.1	0.0	transcription factor bHLH139-like
TrEMBL	A0A199VB91	0.0	A0A199VB91_ANACO; Transcription factor bHLH84
STRING	XP_008787223.1	6e-82	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11680	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	1e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco012350.1