PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011825.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 289aa MW: 33201.7 Da PI: 5.8172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011825.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154	6.9e-48	12	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 pGfrFhPt+eel+++yL++ v+gkkl++ ++i ++++y+++P +Lp ++k +e+ewyfF++rd+++a+g r+nr+t++g+Wkatg+d++v s+ ++ Aco011825.1 12 PGFRFHPTEEELIDFYLRRVVHGKKLNF-DIIGTLNLYRYDPCELPGMAKIGEREWYFFVPRDRRSANGGRPNRTTERGFWKATGSDRPVRSAadPKR 108 9***********************99.99***********888999***********************************9877778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+glkktLvfy+grap+g ktdWvm+eyrl Aco011825.1 109 LIGLKKTLVFYQGRAPRGMKTDWVMNEYRL 138 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.867	10	162	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-56	11	162	IPR003441	NAC domain
Pfam	PF02365	2.9E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEKKGGVQLD LPGFRFHPTE EELIDFYLRR VVHGKKLNFD IIGTLNLYRY DPCELPGMAK 60 IGEREWYFFV PRDRRSANGG RPNRTTERGF WKATGSDRPV RSAADPKRLI GLKKTLVFYQ 120 GRAPRGMKTD WVMNEYRLPD DYTTTTGTIP KEDIVLCKIY RKATSLKELE QRAAMEEEQR 180 ATAEEGATQL QLCFDVGDTL SCDGHENFPI SSTPPEEINT KEMMNEGMKR EVEVTSASSP 240 KQSVYLPEIQ VPSYSLEWMQ DPLLAQLRSP WLDHWSPYAN MLNFQFAD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-49	2	162	6	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661659	2e-93	KM661659.1 Ananas bracteatus clone 44290 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093751.1	0.0	NAC domain-containing protein 35
Swissprot	Q10S65	1e-111	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A199UJH6	0.0	A0A199UJH6_ANACO; Putative NAC domain-containing protein 94
STRING	XP_008813634.1	1e-134	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	4e-87	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Aco011825.1

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]