PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011148.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 383aa    MW: 40345.2 Da    PI: 6.51
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011148.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.68.3e-26187246258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++ gs++prsY+rCt++   gC++kk+v+  ++dp + e+tY g+H++
  Aco011148.1 187 DDGYTWRKYGQKNILGSRYPRSYFRCTHRnfyGCEAKKRVQLLDDDPYTYEVTYCGTHTC 246
                  8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-26176246IPR003657WRKY domain
PROSITE profilePS5081120.185181244IPR003657WRKY domain
SuperFamilySSF1182903.27E-24181246IPR003657WRKY domain
SMARTSM007742.7E-34186248IPR003657WRKY domain
PfamPF031068.9E-25187246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDATLVQILE ACNLAKALEA ELATLQNHPH YLLSSCERVV EAFHKAIESM RSLYPSPLAA  60
SAGLLYGGGE GSSRGGSRMQ EVNILDTRAL EGADNPFFGR GPEETTALGL PQLGLEIQMP  120
GAMAPAAAAT AELAGAPGYT GGPQTEVRPF RGRRAEAEGP PRQPRIPAGS PRRVRAVRTG  180
NSVHPPDDGY TWRKYGQKNI LGSRYPRSYF RCTHRNFYGC EAKKRVQLLD DDPYTYEVTY  240
CGTHTCLTST TPLLVPPLPL PTTIITTIAT TTTATGPTVP FTSGGPSMGN PEGPTAASLA  300
EAMMITGQAP PLSTSIQLGS WLTRGLEGGS SHSGPSHAQG GGGSRDAEWP VADLADAMFN  360
SGSSGSSMDA IFPSTRQDNQ NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21187246968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086781.10.0WRKY transcription factor 55-like
TrEMBLA0A199UPV50.0A0A199UPV5_ANACO; WRKY transcription factor 55
STRINGXP_008782780.11e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-30WRKY DNA-binding protein 55