PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010917.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 344aa    MW: 37694.9 Da    PI: 7.8657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010917.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08235282455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L+el+P +     k +  a +L + ++Y++sLq
  Aco010917.1 235 SHSLAERVRREKINERMRCLQELVPGC----YKAMGMAGMLDEIINYVQSLQ 282
                  8*************************8....355999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-16229299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9229286No hitNo description
PROSITE profilePS5088815.504231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16233293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5235282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRQPTFKSRN AHTPLLSPPY PSCTILKESS FKLRSLPIPT FMGDHHFVDN LNSTTTLKPS  60
PHFMEMDPSC MGLVITDHLA ELHGNGAGAA SMAFCDESYA YFPHHHDQFP LQLQQQQQPP  120
FADQNSSPGL LPMLGDLAPI TLPPPPPAAA AFVGVRKRKA AAAADAAAET SSANSSSQPM  180
ENSLRDHQYR AIKKICSDST AAGKRGRGNS KSKKEVEKPK EVVHVRARRG HATDSHSLAE  240
RVRREKINER MRCLQELVPG CYKAMGMAGM LDEIINYVQS LQNQVEFLSM KLSAASSFYD  300
FNVDIEPMTT LQMMSINANE AQVMEKVREL GGYGGGGCPS FFE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099698.10.0transcription factor bHLH62-like
TrEMBLA0A2H3YEZ14e-74A0A2H3YEZ1_PHODC; transcription factor bHLH75-like isoform X1
STRINGXP_008797805.17e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.14e-49BR enhanced expression 1