PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010845.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 601aa    MW: 65085.3 Da    PI: 6.5208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010845.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13444490455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Aco010845.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 490
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-5063251IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19443508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.20E-15443494No hitNo description
Gene3DG3DSA:4.10.280.101.4E-18444503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10444490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MKTEMDDDAG AGAGDCGGGF WSAEDAAMGA AVLGPEAFDY LAAAHAAASA EGLITAASGD  60
ADLQNKLVDL VEGPADRPGL GWSSAIFWQI SRAKTGDLVL VWGDGYCREP EPGESAPQSA  120
RNPNPESHQK LRKRVLQKLH EAFGGSDEDY YALRLDHVTD AEMFFLASMY FSFPCGKGAP  180
GRAFASQKHL WIPDSELKIS PPNYCFRGFL ACSAGFKTIV IVPFETGVLE LGSVRSIAES  240
SDALQMIKAV FLGTVKVPVV VEKKKNEGNG FVGNYGPGER VQGSAKIFGK DLNLGRPASN  300
VGISVSNQPN SKNSSEQHML FPNVRKGLQG FNWNHARNLN PPQQFGNGIV VASNEVNHHA  360
NGIGDSPVLN QFQLQKQSRQ IDFSTGATSA AGGNLVARVQ GPLEGENADI DALCKEERGS  420
GAIEERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG  480
DAIAYITELQ KKLKEMESEK EQMLDSNMTD PREGVNHHQP QVDVQEIQDE LIVRVSSPIE  540
THPVGKVFRA FEEAQVNVAD SKVAAANGKL VHTIVIKSAG FEQQMKEKLI SALSRVMSST  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-30438503267Transcription factor MYC2
5gnj_B7e-30438503267Transcription factor MYC2
5gnj_E7e-30438503267Transcription factor MYC2
5gnj_F7e-30438503267Transcription factor MYC2
5gnj_G7e-30438503267Transcription factor MYC2
5gnj_I7e-30438503267Transcription factor MYC2
5gnj_M7e-30438503267Transcription factor MYC2
5gnj_N7e-30438503267Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425433RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097519.10.0transcription factor bHLH13
RefseqXP_020097520.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ21e-177MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A199W9N90.0A0A199W9N9_ANACO; Transcription factor bHLH13
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-111ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]