PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010531.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 355aa MW: 37138.1 Da PI: 8.6904

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010531.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.5e-39	94	150	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Aco010531.1 94 PLKCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRP 150 689***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	29.562	95	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	95	149	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	95	149	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	97	133	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MLCNVEEEKE KKKKKKMLVV DILSTNQWPQ AMGERLALMP GNNNNNNNNN RSISTSTTIT 60 TVVTTTSNSA AAAAAAGGAS CAAAAAAAPP APPPLKCPRC DSTNTKFCYY NNYSLSQPRH 120 FCKACKRYWT RGGTLRNVPV GGGCRKNKRP KKQSSHVAGG SDRITGLVPV PGPVGPGPVP 180 LLPPLSHLDV SINPLLFAAA SSSMSLPLIP NLQSSTATQI PIDLQPHVEY QLRGGNEFPL 240 GQIQQPGLAA EFPLLGQSLL PNSIASLLEL NGSGGIIKNE KVMESAAAAA ASNNNDRVEW 300 LTPCESSFES FGASNVALNP TDSPYFYWNS GIIGGGGSSW ADAANCGPSI APLL*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MLCNVEEEKE KKKKKKMLVV DILSTNQWPQ AMGERLALMP GNNNNNNNNN RSISTSTTIT  60
TVVTTTSNSA AAAAAAGGAS CAAAAAAAPP APPPLKCPRC DSTNTKFCYY NNYSLSQPRH  120
FCKACKRYWT RGGTLRNVPV GGGCRKNKRP KKQSSHVAGG SDRITGLVPV PGPVGPGPVP  180
LLPPLSHLDV SINPLLFAAA SSSMSLPLIP NLQSSTATQI PIDLQPHVEY QLRGGNEFPL  240
GQIQQPGLAA EFPLLGQSLL PNSIASLLEL NGSGGIIKNE KVMESAAAAA ASNNNDRVEW  300
LTPCESSFES FGASNVALNP TDSPYFYWNS GIIGGGGSSW ADAANCGPSI APLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF542507	8e-41	AF542507.1 Oryza sativa Dof-like protein 34 mRNA, partial cds.
GenBank	CP012610	8e-41	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBank	FP100350	8e-41	FP100350.1 Phyllostachys edulis cDNA clone: bphylf036a01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093240.1	0.0	dof zinc finger protein DOF3.7-like isoform X1
TrEMBL	A0A199UMT6	0.0	A0A199UMT6_ANACO; Dof zinc finger protein DOF5.3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco010531.1