PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010323.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 339aa    MW: 37388.4 Da    PI: 7.8893
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010323.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.1e-16206299393
                  EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  k+lt+sdv++ gr+vlpkk ae++   ++++ +++l ++d+     W++k+++  +++s++y+l+  + +Fvka+ L++gD++++++++  ++++ 
  Aco010323.1 206 KELTKSDVGTVGRIVLPKKEAEANlpPLIERDGIMLLMNDLILpVAWKFKYRFwpNNRSRMYILE-ATGDFVKAHCLQSGDVFIIYRSS-ASGNYI 299
                  899***********************999999999999995555*******99766777778777.9*******************665.455454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-24199312IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-8204306IPR003340B3 DNA binding domain
PROSITE profilePS508638.854204306IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-18204300IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-12206299IPR003340B3 DNA binding domain
CDDcd100174.25E-20206301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
METKGSGGGS SRKPPSASRA SCNTIAKERD DRIERSEGLL CGHLHPAPSE NFSLPASSQL  60
IQSAGCCFCE QPPDNVECQI PLAFSAATKE WGTDQMLNNT YAFHASSLYN GIYPNITPNQ  120
NSWTDHMRNP CSTLIESCSS INSNNLYMQS DVRSVLRVPP TFPPLCPASE KGMLMNFFQY  180
EPSYAKQNKN SELKFGGSEL RLLVRKELTK SDVGTVGRIV LPKKEAEANL PPLIERDGIM  240
LLMNDLILPV AWKFKYRFWP NNRSRMYILE ATGDFVKAHC LQSGDVFIIY RSSASGNYIV  300
TGEKRARECS ASANTFNCSC KKECSKIGDC ESPASTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-322003081109B3 domain-containing transcription factor FUS3
6j9b_D2e-322003081109B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079987.10.0putative B3 domain-containing protein Os04g0676650
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-35B3 family protein