PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco009528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 24345.7 Da PI: 9.2973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.5 | 9e-17 | 116 | 206 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l l+k+f++++ +k ++ t+tl de+ ++++ + ++++ l++GW++F ++L +gD +vF+l++ +f +v+++r Aco009528.1 116 FVKPMLQSHVTGGFWLGLSKQFCNKYL-PK-RDSTITLVDEEDEEFDTVY--LANKRG--LSGGWRGFSLHHELVDGDALVFQLIEPARF--KVHIIR 205 89*********************9994.44.4559***************..555555..9**********************9986666..999998 PP S CS B3 99 k 99 + Aco009528.1 206 A 206 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-24 | 109 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-20 | 110 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.34E-25 | 114 | 205 | No hit | No description |
PROSITE profile | PS50863 | 11.335 | 116 | 207 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-20 | 116 | 207 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-15 | 116 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MSPSLSYEDL RNKKLQENKR KLEELKLSHL SVALRDASSP KPSPSKSVKR KALQEQRLVA 60 VRRSVRVANL PEPPTYRPCK RRDLSNRVYA SDEERMYAET RAEEVEAELG SEFPTFVKPM 120 LQSHVTGGFW LGLSKQFCNK YLPKRDSTIT LVDEEDEEFD TVYLANKRGL SGGWRGFSLH 180 HELVDGDALV FQLIEPARFK VHIIRASGYH DQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020103583.1 | 1e-142 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 6e-91 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A199UN05 | 1e-130 | A0A199UN05_ANACO; B3 domain-containing protein (Fragment) | ||||
STRING | XP_008788064.1 | 9e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-58 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco009528.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|