PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009318.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 741aa MW: 82054.6 Da PI: 6.6516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009318.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	154	175	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Aco009318.1 154 KCEKCSREFCSSINYRRHVRVH 175 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	153	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	155	175	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MSVAKVSVGS TPDSVVLERN SMKPEREEQD SLENFTRQGI EKQPLFSFSR AGDSSSQWLN 60 LLQGIDQPGS SRVSESPKLE NCIEVRQDRY LEDVDNRSSE MSMRPKSTSD QMQALRISDA 120 VVAFAQAAAR ANGEPEKYLP GWPLLSPIKV QLQKCEKCSR EFCSSINYRR HVRVHRRSLN 180 VDKDFPKNRE YIGAFWDKVF LCADQLSLDE AKDILSLADV AIEEVSGSSI IRALSSWLFK 240 PGFASMPLTY AKAGTSLLDM VHAKPSRFPL SSQELFNILD DASEKTFLCA GTSVPVQKFL 300 FNGEAGRTAL EMKNLVACTS FLLEQKLVKA WLADKAAEAL RCQKLLVEEE EAAQKRQAEL 360 LEKKRMKKLR QKENKLKDST HPDNNFCSSG STQAICVMPS PSSPPDSDSN TPEVLLSPNP 420 IRQSDPDIDS TPKSCSSADY LDQSMGHEMQ MGCEHQEQIP SRNHPKSTRI VRNDLVKNTN 480 YKDPKAISQA IGHKVWMQKT KPKKEEEGSF GQVAIENIDH PILHENAKVL IGSISVTLGD 540 NNGRCNYQEK LGKSDSGFNA NGHSVTLQRP VDHHENGDSA AVKEDKNSED HSSPDIANPI 600 AINKSLLSSG EMREKDIDCY KFSHGEPMSD NSPGPEIFSS KDAEAFLSQR WKAAIAADHV 660 KLVLPPEAEA SDCPDNTACG CINTPLSSDL RGRTILGSAE NRMDGIASLE SVLIISKPKF 720 RHKVEKNCKL KYVPKQTSNV *

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MSVAKVSVGS TPDSVVLERN SMKPEREEQD SLENFTRQGI EKQPLFSFSR AGDSSSQWLN  60
LLQGIDQPGS SRVSESPKLE NCIEVRQDRY LEDVDNRSSE MSMRPKSTSD QMQALRISDA  120
VVAFAQAAAR ANGEPEKYLP GWPLLSPIKV QLQKCEKCSR EFCSSINYRR HVRVHRRSLN  180
VDKDFPKNRE YIGAFWDKVF LCADQLSLDE AKDILSLADV AIEEVSGSSI IRALSSWLFK  240
PGFASMPLTY AKAGTSLLDM VHAKPSRFPL SSQELFNILD DASEKTFLCA GTSVPVQKFL  300
FNGEAGRTAL EMKNLVACTS FLLEQKLVKA WLADKAAEAL RCQKLLVEEE EAAQKRQAEL  360
LEKKRMKKLR QKENKLKDST HPDNNFCSSG STQAICVMPS PSSPPDSDSN TPEVLLSPNP  420
IRQSDPDIDS TPKSCSSADY LDQSMGHEMQ MGCEHQEQIP SRNHPKSTRI VRNDLVKNTN  480
YKDPKAISQA IGHKVWMQKT KPKKEEEGSF GQVAIENIDH PILHENAKVL IGSISVTLGD  540
NNGRCNYQEK LGKSDSGFNA NGHSVTLQRP VDHHENGDSA AVKEDKNSED HSSPDIANPI  600
AINKSLLSSG EMREKDIDCY KFSHGEPMSD NSPGPEIFSS KDAEAFLSQR WKAAIAADHV  660
KLVLPPEAEA SDCPDNTACG CINTPLSSDL RGRTILGSAE NRMDGIASLE SVLIISKPKF  720
RHKVEKNCKL KYVPKQTSNV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	368	EKKRMKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666404	1e-149	KM666404.1 Ananas bracteatus clone 51705a microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020113011.1	0.0	uncharacterized protein LOC109727340 isoform X1
TrEMBL	A0A199VWQ7	0.0	A0A199VWQ7_ANACO; Uncharacterized protein
STRING	XP_008787485.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-82	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aco009318.1