PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009204.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 417aa    MW: 45129.6 Da    PI: 8.5598
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009204.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1660104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
      Aco009204.1  60 REKWTEEEHEKFLEALKLFGRA-WRQIQEHIG-TKTAVQIRSHAQKF 104
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-1554107IPR009057Homeodomain-like
PROSITE profilePS5129420.48555109IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-957105IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-1658107IPR006447Myb domain, plants
SMARTSM007171.3E-1359107IPR001005SANT/Myb domain
PfamPF002496.4E-1460103IPR001005SANT/Myb domain
CDDcd001671.08E-1062105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MVATALLENS RKPYLNPISI PERRMRVDVG SSAVGSGAQP KETDDYAIKV RKPYTITKQR  60
EKWTEEEHEK FLEALKLFGR AWRQIQEHIG TKTAVQIRSH AQKFFSKVYH PPPLERESGS  120
EKAIEIPPPR PKKKPLRPYP RKNGVSKLQL SSVGSSSVSE QENGSPVSVL SRLGSDTSGS  180
SISNRPSPVS SDGGDPTGTS LIEQDNGCQS STTSTEEQNS TSPPASKDEA HMEIDEDSKD  240
QVLSKDASPM IEAQATTLKL FGRTVVITDL KMLCSSTAKY DKQSCQASAA PVEQHGSNMQ  300
LQLLSAAAAT NEVSSQFQCG NFAEASVAAL PWWWAITPQI VSPRSRETGE KAGACLSASS  360
SDSVRSGEPE PAPMFKPSKN SAFVRVEADK NITATRGFVP YKRCSTTEKQ SVAAAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6660113e-53KM666011.1 Ananas bracteatus clone 51221 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113491.10.0protein REVEILLE 2-like
TrEMBLA0A199W3M21e-161A0A199W3M2_ANACO; Protein REVEILLE 2
STRINGXP_008804812.11e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-35MYB_related family protein