PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009100.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 340aa    MW: 37005.5 Da    PI: 7.9739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-07197240755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  e+ rrRR+ i ++   Lr l+P+      +K++ a+ Le+A +Y++ L+
  Aco009100.1 197 EISRRRRKSISDRTRILRGLMPWE-----RKMDTATLLEEANKYVRFLE 240
                  788********************9.....8***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.824190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-6196243No hitNo description
SMARTSM003532.7E-5196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-5197240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-10197255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDRELPQLLI SPSLSGPTDS AEWRSMYPVV AETLPLYALD CYGGLLPPPP QLGIAPAPYP  60
PMEWLSSGNV VHDLDVFHGS NPIGSLPSAQ DSRLKLKFPK IEPLAIDDRS AIALSAGSAA  120
FHHLPGLRSL EPPPDLVAEA PDPPRFSGDL ISLIGPSKKR LPERSFSDPP PPPPPQPPPP  180
PPPPLRSTGF PRPPPSEISR RRRKSISDRT RILRGLMPWE RKMDTATLLE EANKYVRFLE  240
AQVTALQTMP ERSARFAPPR EPPGSLPCPA AALGRLNRQQ LLQVLVNSPV VQDRLYARGV  300
CVFSAEQVAS LRCSAERHRP PPLLLPPAAA ADDDDDVRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H3WZQ57e-63A0A2H3WZQ5_PHODC; transcription factor bHLH53
STRINGXP_008776122.11e-63(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2498544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.15e-14bHLH family protein