PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | YABBY | ||||||||
Protein Properties | Length: 179aa MW: 20161.9 Da PI: 8.4017 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 209.4 | 1.3e-64 | 2 | 152 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +++ ++e+vCyv+CnfC+tilavsvP +slf++vtvrCGhC llsvn+ + q+la ++ + ++kv +en+ ++++++++++t ++ Aco008751.1 2 STQIAPEHVCYVHCNFCSTILAVSVPCNSLFNIVTVRCGHCGVLLSVNMGNLLQTLARQDY---------QIHNKVLRENCGEYESSSKCNKTPMAY- 89 66789*************************************************9999995.........344566778888888888888887776. PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++n+++ p +rPPekrqrvPsaynr eeiqrika+nP+ishreafsaaaknWahfP+ihfgl Aco008751.1 90 SMPNNQQQVQP-----MRPPEKRQRVPSAYNR---EEIQRIKANNPEISHREAFSAAAKNWAHFPRIHFGL 152 66888888877.....7**************7...**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-64 | 6 | 152 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSTQIAPEHV CYVHCNFCST ILAVSVPCNS LFNIVTVRCG HCGVLLSVNM GNLLQTLARQ 60 DYQIHNKVLR ENCGEYESSS KCNKTPMAYS MPNNQQQVQP MRPPEKRQRV PSAYNREEIQ 120 RIKANNPEIS HREAFSAAAK NWAHFPRIHF GLTLDGANPE KRDEEITMPG PQKAQGFY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020095287.1 | 1e-131 | protein YABBY 2-like | ||||
Swissprot | Q10FZ7 | 3e-73 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | M0TFM3 | 4e-83 | M0TFM3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr7P07830_001 | 7e-84 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-62 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco008751.1 |