PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MYB | ||||||||
Protein Properties | Length: 447aa MW: 46981.5 Da PI: 6.7865 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lvd+v+++G g+W+++ r g+ R++k+c++rw ++l Aco008438.1 27 KGPWTAAEDAILVDYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 74 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++ ++E+ l+++++++lG++ W++I+++++ gRt++++k++w++ Aco008438.1 80 KGPFRPDEERLILRLHALLGNK-WARISSHLP-GRTDNEIKNYWNT 123 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.084 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-30 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-14 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 25.827 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-11 | 82 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 82 | 128 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MTRNCNAVVG VEGGGSSGGR GGGGMKKGPW TAAEDAILVD YVRKHGEGNW NAVQRNSGLA 60 RCGKSCRLRW ANHLRPNLKK GPFRPDEERL ILRLHALLGN KWARISSHLP GRTDNEIKNY 120 WNTRLKRRQR AGLPVYPPDI KRDDRLPRHS VPHSAAAPPP SPPPLQPLHT EFIFDPAVAA 180 AAPPGYPLSP ANSITATPAS AAAAIPMLAQ HNPHFASHLP ELQLLHFGAS SPSSAVFAEL 240 PSNQLLFPEP LHLHDYGGGG GGGGGGGGGG VFFDALLMQE EVRVGGGGDE SFLLGRTGSL 300 PELVPEEQDS EWLHVNGGGG GGGSKRITSP EAITTIQQQY LNGIRTDCLN ETKQKREAES 360 CGDEISCLFE GMPTATMTAT FAEWFSTDGC CGSGEASNGP SSVITTDDGT EQLGMQHFAS 420 SSPPPLAAAS ASASASGREW SIGSCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 27 | 128 | 7 | 107 | B-MYB |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 23 | GGRGGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM662333 | 1e-125 | KM662333.1 Ananas bracteatus clone 45985 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020109334.1 | 0.0 | uncharacterized protein LOC109724819 | ||||
TrEMBL | A0A199UF50 | 0.0 | A0A199UF50_ANACO; Transcription factor GAMYB (Fragment) | ||||
STRING | XP_008775421.1 | 2e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 3e-66 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Aco008438.1 |