PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | AP2 | ||||||||
Protein Properties | Length: 452aa MW: 49025.4 Da PI: 9.4516 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.7 | 3.2e-09 | 113 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ +++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Aco008260.1 113 SIYRGVT--RWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 167 579***7..48**********5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.5 | 4.5e-15 | 210 | 261 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Aco008260.1 210 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 261 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.04E-16 | 113 | 177 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-13 | 113 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.684 | 114 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-11 | 114 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-19 | 114 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-5 | 114 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.03E-23 | 210 | 271 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-18 | 210 | 271 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-10 | 210 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 211 | 269 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-18 | 211 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 211 | 275 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MYTIILAVLS FSLIFIFIFF FFFSFHSPLS ITPSSPSTLL LRSSSSSSSF AFCEKTVSLV 60 RSKLRGSNGG LRAQLALFLP LSPSWPLRSL LHSAAAAEPR RVAEESTFGQ RTSIYRGVTR 120 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGPNA TTNFPVSNYE 180 KELEEMKTMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 240 TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVEAILN SDLPIGSLSS KASKVSSDAS 300 SMTSASELRP GRSAEAPSQG GQDYWSLLAH HYHQQELYNA SSGFEVFGSG VNVDFSASSG 360 GGGGGGNSYG GGVMWSGGGA MAHQMHDNRG SSSSSSACSN IPYATPIVMG GNYESSNSNV 420 GSWGTAPSYF YNYQGATSNA SAMHTALYGM E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ845072 | 4e-37 | AJ845072.1 Ananas comosus var. bracteatus microsatellite DNA, clone mAcCIR042. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020109315.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-119 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A199UY51 | 0.0 | A0A199UY51_ANACO; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | XP_008789664.1 | 1e-152 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-110 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Aco008260.1 |
Publications ? help Back to Top | |||
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