PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | YABBY | ||||||||
Protein Properties | Length: 183aa MW: 20042.9 Da PI: 9.407 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 115.3 | 1e-35 | 18 | 155 | 6 | 134 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......lleelkve.eenlksnveke.esast 94 seq+Cyv+CnfC+ +lavsvP +sl+k+vtvrCGhC +llsvn++ + a++ ++ + + ll e +l + + + +++ Aco007606.1 18 LSEQLCYVHCNFCDSVLAVSVPCSSLLKTVTVRCGHCGNLLSVNMRALLLAAGANQ-FHFAQYPFlspthqtLLGEIPYPpPPSLVLDQPNVtSLSNN 114 69****************************************99888776655544.33333332333333322222222122333333332023334 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfik 134 + +++++ ed+e+p+ p ++r PekrqrvPsaynrfik Aco007606.1 115 NGAATSVRGREDQELPQNPVvINRAPEKRQRVPSAYNRFIK 155 4455566889999***9998689*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.1E-40 | 19 | 155 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSSATFPL EHLSPPPLSE QLCYVHCNFC DSVLAVSVPC SSLLKTVTVR CGHCGNLLSV 60 NMRALLLAAG ANQFHFAQYP FLSPTHQTLL GEIPYPPPPS LVLDQPNVTS LSNNNGAATS 120 VRGREDQELP QNPVVINRAP EKRQRVPSAY NRFIKGVRMF FSRTGSTPPL QRTWESLRSR 180 AR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093491.1 | 1e-109 | protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 1e-43 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-43 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A199UIS3 | 2e-90 | A0A199UIS3_ANACO; Protein YABBY 5 | ||||
STRING | XP_008787013.1 | 2e-56 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-29 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco007606.1 |
Publications ? help Back to Top | |||
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