PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco007027.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 368aa    MW: 42015.2 Da    PI: 4.8528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco007027.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0691114226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC ff + G+C+ G +CkF+H+
  Aco007027.1  91 KSILCEFFKA-GQCQKGFKCKFSHD 114
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-589115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27289116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-491115IPR000571Zinc finger, CCCH-type
SMARTSM003564.5159196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953159197IPR000571Zinc finger, CCCH-type
PfamPF165432.8E-17217295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPPKNQASKA DLAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLQQSVQPKP DPSKAAAKKK  60
KEEEKARDKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK  120
GEKIDIYTDK RDQETMEDWD QETLEKVVES KKNEYNQNKP TDIVCKYFLE AVEKKQYGWF  180
WVCPNGGKDC HYRHALPPGY VLKSQMKALL EEEAEKMPIE EEIEEQRSKL TASTPITPEL  240
FMQWKNKKMK EREAGLAALR AERAKNDRMS GRELFLSDAS LFVDDAEAYD IYEREEEPDA  300
AEERVKDNKT QPEGPSSSTS FSKEAEEVLA EEDDDDDELD IDELNELEAS LSKASIQIRE  360
PSIEASS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114267.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A199UWL90.0A0A199UWL9_ANACO; Zinc finger CCCH domain-containing protein 11
STRINGevm.model.supercontig_2216.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-150C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]