PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006872.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 174aa MW: 18590.8 Da PI: 4.4002

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006872.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Aco006872.1 44 YNCTFCKRGFSTAQALGGHMNIH 66 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.58E-7	42	71	No hit	No description
Pfam	PF13912	1.2E-6	44	69	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.635	44	71	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.6E-4	44	70	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MADLADKKES KGSTEDDRDS PNGDGSDDDD DDDDDTASAK GQFYNCTFCK RGFSTAQALG 60 GHMNIHRKER ARTTTTTTTM SRSNSTAAAA AYVVSESVEG SGSSTGGYYY SPSSQSVRAY 120 SAHSQRPREL CLFGSGDLSL GLGLHGGDGE EEEKKDKEKE EEVDLELRLG HEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020112628.1	1e-104	zinc finger protein GIS-like
TrEMBL	A0A199VFB0	1e-122	A0A199VFB0_ANACO; Transcriptional regulator SUPERMAN
STRING	XP_008794311.1	7e-25	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	7e-11	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco006872.1