PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006633.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 432aa    MW: 46678.6 Da    PI: 8.3252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006633.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-096389127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C +++rtG C++G +C+++H+p
  Aco006633.1 63 PGEPDCAYYLRTGLCRFGMTCRYNHPP 89
                 5789*********************97 PP
2zf-CCCH39.21.2e-12110134327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tGtCk+G++CkF H++
  Aco006633.1 110 QPECQYYLKTGTCKFGATCKFDHPR 134
                  799********************96 PP
3zf-CCCH36.11.1e-11156180327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Aco006633.1 156 EKECAYYLRTGQCKFGNTCKFHHPQ 180
                  679********************97 PP
4zf-CCCH41.62e-13312337227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+f+++tG Ck+G++CkF+H++
  Aco006633.1 312 DQPDCQFYMKTGDCKFGASCKFHHPR 337
                  6899********************96 PP
5zf-CCCH36.29.9e-12358383227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ lC f++r+G+Ck+G++CkF H++
  Aco006633.1 358 GEQLCVFYSRYGICKFGPNCKFDHPM 383
                  788*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2396290IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-46289IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-76489IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-56790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281107135IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6111136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5113134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422153181IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5153180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6154181IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4159179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061310338IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6310337IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6313340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6316338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544356384IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7356383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6358384IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8358383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4360381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEFAAAAAAA AAAAARQMRG ARAEVVAAGV DASSSALDEE EILWQMNMRG SESMEYGTYP  60
ERPGEPDCAY YLRTGLCRFG MTCRYNHPPD RRLAIAAASM KGGYPERVGQ PECQYYLKTG  120
TCKFGATCKF DHPRDKAGIA SRVQLSILGF PLRPNEKECA YYLRTGQCKF GNTCKFHHPQ  180
PSNAVVSLRG SPIYPSVHSP TSPVQQSYPG GLTSWPLSRA SFIASPRWQG PSSYAHLILP  240
QGLVQVPNWN TYPGQLGSVS SSENRQQSSG NVQLYGTSNQ SEPSGGPIGQ SDSMPLVQFG  300
LQRESVFPER PDQPDCQFYM KTGDCKFGAS CKFHHPRERL VPAPNCVLSP LGLPLRPGEQ  360
LCVFYSRYGI CKFGPNCKFD HPMPAPMGIY AYSVSTPSAS ANAPAVRRLL GSPSGPSESQ  420
QMASADDNGS G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6640601e-173KM664060.1 Ananas bracteatus clone 48789a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096920.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A199VUT20.0A0A199VUT2_ANACO; Zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008794629.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-149zinc finger protein 1