PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006616.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 237aa MW: 27018.5 Da PI: 8.7487

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006616.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.6	8e-30	18	71	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH+rF +av++LGG++kAtPk+il+lm vkg+ ++h+kSHLQ+YR+ Aco006616.1 18 PRMRWTEELHRRFADAVDSLGGPNKATPKRILQLMAVKGVNISHIKSHLQMYRS 71 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-28	14	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.31	14	74	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-15	18	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-24	18	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-6	19	70	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRGLERRGVR QYNRSNVPRM RWTEELHRRF ADAVDSLGGP NKATPKRILQ LMAVKGVNIS 60 HIKSHLQMYR SMCSTSTLQN LISTEQDRVR HDNFHNYTSE SHHRDPVQLN FLLSCNHSYQ 120 IPSIDKVLRD WAAKNREFNP RNGCFGTGDQ LFQLICNHQK PQRELNYELS LSSLVHRMPK 180 SCEETSEVGS SIEFDTSEDV PICRKKSIEY PNCIANTTAA KNGINLELTI SSPGCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	19	71	3	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	19	71	4	56	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103428.1	1e-179	transcription repressor KAN1-like
Refseq	XP_020110861.1	1e-179	transcription repressor KAN1-like
TrEMBL	A0A199VP41	1e-177	A0A199VP41_ANACO; Putative Myb family transcription factor
STRING	XP_008811121.1	4e-62	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5493	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco006616.1