PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006513.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 376aa    MW: 39907.7 Da    PI: 6.083
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006513.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.3e-082061439
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                 r+C+ ++   + l+C+ +  +lC  C    H g       H++
  Aco006513.1 20 RRCDGCKGAAAVLYCRADAAYLCGRCDAGVH-GanklasrHER 61
                 79******99******************999.44667777765 PP
2zf-B_box253.8e-0885129341
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                   ++C+ +e+ +++  C+ +   lC  C   +H+       H++ p
  Aco006513.1  85 VWVCEVCEQAPASVTCKADAAALCVACDADIHSAnplarrHDRAP 129
                  689*****************************6577777887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-121764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.041764IPR000315B-box-type zinc finger
CDDcd000214.05E-72064No hitNo description
PfamPF006432.9E-62061IPR000315B-box-type zinc finger
PROSITE profilePS5011910.60883130IPR000315B-box-type zinc finger
SMARTSM003367.5E-1483130IPR000315B-box-type zinc finger
PfamPF006432.3E-684129IPR000315B-box-type zinc finger
CDDcd000217.69E-886130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEPGGEGRKY NKYWGLEGGR RCDGCKGAAA VLYCRADAAY LCGRCDAGVH GANKLASRHE  60
RVWVCEVCDA GVHGANKLAS RHERVWVCEV CEQAPASVTC KADAAALCVA CDADIHSANP  120
LARRHDRAPV VPLLDPLPPS AYAAAAAAHD ILLRGADDCD DDLADDDADD DEQLGAAGED  180
NGNEAEAASW LLPNPGPIPN NPNPNPNPCG GGGGGIIKGL MEAPEIKSVE FFLSDVDRYL  240
DLEYASSVDA RFHHADSVVP VHASGGSSGA IELDFARSKP SYATYPAQSL SHSVSSSEVG  300
VVPDGSSIRL RLRRGVRRRP RLRRRPLLLR SPYPRSDPPP RSSYLYAILC LNLNFGSLSL  360
SPLPHSLSLS LSLSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6663321e-106KM666332.1 Ananas bracteatus clone 51620c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103525.11e-157zinc finger protein CONSTANS-LIKE 4-like isoform X1
RefseqXP_020103526.11e-157zinc finger protein CONSTANS-LIKE 4-like isoform X2
TrEMBLA0A199VZH51e-125A0A199VZH5_ANACO; Zinc finger protein CONSTANS-LIKE 5
STRINGXP_008789696.16e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.23e-27CONSTANS-like 3