PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006125.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family CPP
Protein Properties Length: 120aa    MW: 13401.3 Da    PI: 8.0648
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006125.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR38.72.1e-121148542
          TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                 +C+C+ks+Cl+ YC C +++++C+e+C C++C+N++e+
  Aco006125.1 11 NCKCEKSQCLQFYCGCLSRERYCNEHCGCKNCHNNKEH 48
                 7**********************************986 PP
2TCR23.21.4e-077393222
          TCR  2 ekkgCnCkkskClkkYCeCfa 22
                 +k gCnC+ks+C+k+YCeC++
  Aco006125.1 73 RKSGCNCEKSQCIKRYCECYK 93
                 578*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-4748IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.0478114IPR005172CRC domain
PfamPF036385.1E-91146IPR005172CRC domain
SMARTSM011140.0372100IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-47593IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
TCKKAAVEGP NCKCEKSQCL QFYCGCLSRE RYCNEHCGCK NCHNNKEHMA EVSDVIARAE  60
ISNRHAINAD RTRKSGCNCE KSQCIKRYCE CYKVCCSLVA YFDTSNVGCS SLSMHSYLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-13Tesmin/TSO1-like CXC domain-containing protein