PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005966.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 292aa    MW: 32096.6 Da    PI: 7.3355
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005966.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l  +v+++G+g +W + +++ g++R++k+c++rw++yl
      Aco005966.1 14 RGPWSPEEDAILRSYVEMYGNGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding414.6e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + +  G++ W+ Ia++++ gRt++++k++w++
      Aco005966.1  69 GGFTEEEDTIICSLYNSIGSR-WSIIASKLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.036966IPR017930Myb domain
SuperFamilySSF466898.24E-2811109IPR009057Homeodomain-like
SMARTSM007175.6E-121364IPR001005SANT/Myb domain
PfamPF002499.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-251569IPR009057Homeodomain-like
CDDcd001671.63E-81662No hitNo description
PROSITE profilePS5129415.2667117IPR017930Myb domain
SMARTSM007174.1E-1267115IPR001005SANT/Myb domain
PfamPF002491.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2370116IPR009057Homeodomain-like
CDDcd001671.08E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRAPCCDKR NVKRGPWSPE EDAILRSYVE MYGNGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDTIIC SLYNSIGSRW SIIASKLPGR TDNDIKNYWN TKLKKKFAAG  120
LITTTSTSSS SRIYHSLPTS PPLPPPLPLP DHLPTIKAES FAMPSEDLLA QVYAFTAHLS  180
PSTEEASASS SSITVDNNNN NNNSNNNNNS NNNNNNNNNN SSSYNWSIDG NGGDDAFFFS  240
ELGFGCPMAG DLNCFSSLSS TWGSNSEMKP QGVYQSLTSF LVSEMQYKEM N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105435.10.0transcription factor RAX1-like
STRINGXP_008795486.16e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-72myb domain protein 84