PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005839.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 532aa    MW: 57760.1 Da    PI: 7.4654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005839.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13371417455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Aco005839.1 371 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYIQELQ 417
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-4746238IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-18370432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-15370421No hitNo description
PfamPF000107.3E-11371417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17371430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVMGRLWSEE ERAMAAAVLG PRAFEYLSGC RVSPEGVVAG DVDAELQTKL QEVVEGPSGR  60
PWTYAIFWQA TRARTGEALL VWGDGHCRDA EPRRRGRSIV ARAGEAEREE ERRQRMIKRV  120
LQKLDAVYGC GDENAAIRLD RVTDAEAYFL ISMYFSFPLG EGGPGRALAS GKPFWVSDVA  180
TSSSSSSSEF CVRAFLARSA GFRTVAFVPL DGGGVVELGS LDRVPEGFEA MKMIRSVFSR  240
GENRLKESIP RIFGMDFTSI GRPPQISASG PEERPPRPRP RPRPQQLPPP PPPLGTVDFG  300
NGGGATSAAA AASPAAAQSG GALALDSDLP DVESSSKDDR RITAAAAAAA EERRPRKRGR  360
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI AYIQELQSRL  420
KEFESDRARW NNPGLGPRPP ELEPPSVEIQ ALHDEVIVRV TSPLDGHPLS RVIQAFNESN  480
VSVVDSNVLA TNGSVLHTFV VKSPPDSEQA TRDKIVAAIS CEMTTSQSQS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27365432269Transcription factor MYC2
5gnj_B2e-27365432269Transcription factor MYC2
5gnj_E2e-27365432269Transcription factor MYC2
5gnj_F2e-27365432269Transcription factor MYC2
5gnj_G2e-27365432269Transcription factor MYC2
5gnj_I2e-27365432269Transcription factor MYC2
5gnj_M2e-27365432269Transcription factor MYC2
5gnj_N2e-27365432269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197PRRRGRS
2352360RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6664924e-65KM666492.1 Ananas bracteatus clone 51810b microsatellite sequence.
GenBankKM6664934e-65KM666493.1 Ananas bracteatus clone 51810c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106280.11e-177transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotA0A3Q7ELQ21e-141MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A199VH390.0A0A199VH39_ANACO; Transcription factor ABA-INDUCIBLE bHLH-TYPE
STRINGXP_008806486.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-60bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]