PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GATA | ||||||||
Protein Properties | Length: 209aa MW: 23766.5 Da PI: 9.7853 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61 | 1.5e-19 | 89 | 122 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 CsnC+tt TplWR+gp+g+k+LCnaCG+++rk + Aco005745.1 89 CSNCNTTRTPLWRSGPQGPKSLCNACGIRQRKAR 122 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-14 | 82 | 124 | No hit | No description |
SMART | SM00401 | 7.8E-20 | 83 | 135 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.1E-16 | 87 | 123 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.086 | 87 | 119 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 3.34E-13 | 88 | 120 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 89 | 114 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.2E-17 | 89 | 122 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRSSDLILRS LLPTNEYKNG CMEKSSPDRY ERKEDVHCSL EWTSLKMQWT RKMMGSDQLV 60 ERKLRRRKQD LQCQEQETKD NSNGIIRVCS NCNTTRTPLW RSGPQGPKSL CNACGIRQRK 120 ARRAMALAAA GGAVISAEKP IEMERNEDCC ILPYKKRCRI TPTAKKKVKF EDVIISLNNN 180 SAFHRVFPQD EKDAAILLMG LSCGLIQN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098891.1 | 1e-154 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A199VQU9 | 1e-118 | A0A199VQU9_ANACO; Putative GATA transcription factor 22 | ||||
STRING | XP_008797761.1 | 2e-56 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-25 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco005745.1 |