PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005520.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 349aa    MW: 38278.8 Da    PI: 6.9481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.6e-27121182159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC + k+v+r++edp+v ++tY+g H+++
  Aco005520.1 121 LDDGYSWRKYGQKDILGAKYPRGYYRCTHKntqGCAASKQVQRTDEDPTVYDVTYHGVHTCQ 182
                  59***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.894116179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-28118183IPR003657WRKY domain
SuperFamilySSF1182902.62E-25120183IPR003657WRKY domain
SMARTSM007743.5E-39121183IPR003657WRKY domain
PfamPF031061.1E-25122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MENTFSPLIA ELTQIKELMM QLEAQLDQPF PIELSKSMVS KALLATEKSI CMANKSSFCC  60
PNCGPEGVSP PHSASGSPRS EGSDHASKFH ERREFLKKRK ALPTWRSQVK VGAESGFEAP  120
LDDGYSWRKY GQKDILGAKY PRGYYRCTHK NTQGCAASKQ VQRTDEDPTV YDVTYHGVHT  180
CQQRPHPLPA RAKDHEQITH RGPAHVGPLH PLRPGLAVKT EGAFGPSSAH EQLNFVPFAF  240
PSTTIESSNN NNNNNNIYFS SHAWEDCFPA ATVGGGFSPS FASPATSESN YFSPPLRGLR  300
LHKSESDLTE VISAATSTTN SPMADMDFML DGLELHPSFH LDASSFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22121182869OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098885.10.0probable WRKY transcription factor 41
TrEMBLA0A199W8M90.0A0A199W8M9_ANACO; Putative WRKY transcription factor 41
STRINGXP_008791438.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-44WRKY family protein