PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005374.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ZF-HD
Protein Properties Length: 350aa    MW: 36535.2 Da    PI: 8.9023
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005374.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer902.3e-28122171357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  ++rY+eCl+NhAa+lGgh+vDGCgEfmp+++     + lkCaAC+CHR+FHRr+ 
  Aco005374.1 122 AARYRECLRNHAAALGGHVVDGCGEFMPAPD-----DPLKCAACDCHRSFHRRDA 171
                  689*************************944.....58***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-24123170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-14124167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-24124170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.397125170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-31258325IPR009057Homeodomain-like
SuperFamilySSF466893.4E-19259325IPR009057Homeodomain-like
PROSITE profilePS500718.649262326IPR001356Homeobox domain
TIGRFAMsTIGR015651.0E-28264320IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEFRSNQDDD MGLPSSLSYN NNNNNNNNNN NNNSSNNPLP IRGSAFTRPS SSSPSASSLL  60
SPRGGGGGGG GGGCRNGSYP AGHPLDSQSS HLLTPISAKA AASASASAVQ NVASDAAAAA  120
AAARYRECLR NHAAALGGHV VDGCGEFMPA PDDPLKCAAC DCHRSFHRRD APAADYHRAA  180
AAAAAAAAAR LPLLLPPPHP SQKHFHLSGG GGGFGFPTSP SRGAVHTSGS GGTTTESSSE  240
ERLDAAAAAV AAAAAAAAGA AGPRKRFRTK FTAEQKERMM EFAERVGWRI QKQDEALVEQ  300
FCSEVGVRRQ VLKVWMHNNK HSSRKQLLPQ QQQQQQQQLL QQSQEQQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-272653221875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098739.10.0zinc-finger homeodomain protein 6-like
RefseqXP_020098741.10.0zinc-finger homeodomain protein 6-like
RefseqXP_020098742.10.0zinc-finger homeodomain protein 6-like
RefseqXP_020098743.10.0zinc-finger homeodomain protein 6-like
RefseqXP_020098744.10.0zinc-finger homeodomain protein 6-like
SwissprotB8AX533e-63ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A199W0X01e-146A0A199W0X0_ANACO; Zinc-finger homeodomain protein 6
STRINGXP_008810728.11e-73(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-28homeobox protein 22