PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | YABBY | ||||||||
Protein Properties | Length: 179aa MW: 19962.6 Da PI: 9.4869 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 177.6 | 7.7e-55 | 21 | 152 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120 avsvP++ ++++vtvrCGhC++llsvn+ + q l+ ++ ++++ +++++ ++ +++++++t + +++++++++ vp irPPe Aco005138.1 21 AVSVPNNNILNIVTVRCGHCANLLSVNMGAFLQSLPLQDA--------QVHNIGFHDKC--EYGSSSKCNRT-TVMYSMQSEQQPTVP-----IRPPE 102 8***********************************9996........66677777653..23333333333.334455666666666.....8**** PP YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 krqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Aco005138.1 103 KRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSAAAKNWAHFPHIHFGL 152 ************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-59 | 21 | 152 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.01E-9 | 86 | 145 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.8E-5 | 100 | 146 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.00E-6 | 106 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSSHHLPQHE SYIGRSDPSS AVSVPNNNIL NIVTVRCGHC ANLLSVNMGA FLQSLPLQDA 60 QVHNIGFHDK CEYGSSSKCN RTTVMYSMQS EQQPTVPIRP PEKRQRVPSA YNRFIKEEIQ 120 RIKANNPDIS HREAFSAAAK NWAHFPHIHF GLTLDSKKQV KLDDTIATPA PQKAKGFY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666262 | 5e-59 | KM666262.1 Ananas bracteatus clone 51551b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092610.1 | 1e-116 | protein YABBY 2-like isoform X1 | ||||
Swissprot | Q10FZ7 | 1e-63 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A2H3X4B6 | 6e-84 | A0A2H3X4B6_PHODC; protein YABBY 2-like | ||||
STRING | XP_008778120.1 | 1e-84 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-57 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005138.1 |