PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | FAR1 | ||||||||
Protein Properties | Length: 891aa MW: 97712.5 Da PI: 8.9419 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29 | 3.5e-09 | 142 | 174 | 59 | 91 |
FAR1 59 rtgCkaklkvkkekdgkwevtkleleHnHelap 91 Cka+++v ++++g+w v+kl+ eHnH+l p Aco005024.1 142 SDRCKAMMEVVLKEHGRWAVSKLVAEHNHPLLP 174 567***************************975 PP | |||||||
2 | FAR1 | 57.7 | 3.8e-18 | 545 | 619 | 1 | 78 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 +fY +YA++vGF++rk k+ rn + +r +vCs+eg+r ++ ++ +++++r+etrtgC+a++ ++ +++gk+ + Aco005024.1 545 EFYVRYATTVGFNIRKGWWDKTARNV-TRSRVYVCSREGFRPKNITT--DTKKPRPETRTGCQARMAIRITSSGKYSI 619 6********************96666.99**************9987..999***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-7 | 142 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.1E-15 | 545 | 619 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence Send to blast |
MVLIAEILDD AANDEEGRSS KERGGGGTSE EAKENCDNPK PSSDKPEVVV PTSENETETK 60 EPTAIDDSPN LCHAPSAAET SSSSAPATGP PPEQPLYNEY ALRVAYIMRS YLSMRQPNFT 120 DAAAASGGVG PSSAADAATG SSDRCKAMME VVLKEHGRWA VSKLVAEHNH PLLPPPEGCV 180 SAPAVPVMGM EFESAEAAKA FYYGYGESSG FKARTGSNRR SSGSGALIMQ RFLCWRGSYL 240 MYRNNQGTFT GKRKRGPYKK RALKAAQETA ASERDGDVTN GAASNGLIEE LQSSPTLNDS 300 LAAGEGAGAK AAAASAVGLE TASAEVKDDW KGKDDAKAIP AANTSQSRLL RELGVRVSRY 360 TNEERRNIIL KYMMKRNNRP GVERPSKVPS RQALARRRQR GSGGRFLSTG EPKVFQRGNL 420 YLKGASEALE DILVGQKRRS QRIKHWMKGT SKVATGAFLV EENHRQTSFT EKPRIILAIP 480 LDHALAEGRQ QGRVGKILGE GESQTSSKVG EVTESEADAA AEISTDTGGE PKVGMVFLNE 540 DKAYEFYVRY ATTVGFNIRK GWWDKTARNV TRSRVYVCSR EGFRPKNITT DTKKPRPETR 600 TGCQARMAIR ITSSGKYSIL LKEYLKPEID IPSFVKQLDK LVEEKRYAEL LADYHANQGI 660 SRIPPLRLLW QAATAYTPSI FEQFRMEFEL FLGCMSDQLL EQVENILQTR LNAVSKGQQQ 720 TLVQNEGNIN EFSRKASRKK NKNGEDRCRH QNPLESNKRQ KGRQGVYDEA NGVRGDEPSA 780 ALPDIPAHPR NPPNQFLSSS QFMQTPYVPS HQFGLGPVQG IHEMTQFSQE SSSAALPPQP 840 FHSSSQLTQN AVQGCPAPDV HSLQFVASNP QLGEQSTDQR HCTIPLWDFL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 737 | 760 | RKKNKNGEDRCRHQNPLESNKRQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093145.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
TrEMBL | A0A199VVC6 | 0.0 | A0A199VVC6_ANACO; Protein FAR1-RELATED SEQUENCE 6 | ||||
STRING | XP_008787331.1 | 2e-98 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14833 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-14 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005024.1 |