PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005017.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 336aa    MW: 38133.7 Da    PI: 9.0452
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005017.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.9e-1622110271
     trihelix   2 WtkqevlaLiearr....emeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                  W+ +e+++Liea++    +   rl+r k                  + + +W++v +++++ g++rs++qC+++w+nl ++ykk+++ e + 
  Aco005017.1  22 WSLNETMVLIEAKKmdneR---RLKRVKeseermvgsssstggnlkQPEMRWKWVEDYCWRYGCHRSQNQCNDRWDNLMRDYKKVRAYELSL 110
                  ************9964441...334333344555666666777776999************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0851497IPR017877Myb-like domain
PfamPF138376.7E-1220107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQVREMEREE HEKSREYRRG NWSLNETMVL IEAKKMDNER RLKRVKESEE RMVGSSSSTG  60
GNLKQPEMRW KWVEDYCWRY GCHRSQNQCN DRWDNLMRDY KKVRAYELSL RGQRVNDGLS  120
YWKLNKHERK ERNLPSNMLL EIYEALVEVV ERKGGEDHMG TGGSASKKEG VMVKESQTGS  180
ISPLVPLTMQ LPSSSHGPQT TMIMPPPPPP PHPTNQTQPL DSVDSDDNDH SNSSTERKRR  240
REEGPSTSSA RTKQHSISSS ISKSASILAA ALQASEEREE SRHRDLMILR ERAASLEQSK  300
SEISSQSMEA IATAINKLAS SILGLVSDRA SSHPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093045.10.0trihelix transcription factor ASR3-like
TrEMBLA0A199VWC40.0A0A199VWC4_ANACO; Trihelix transcription factor ASR3
STRINGXP_008787373.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-54Trihelix family protein