PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004978.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 335aa    MW: 37000 Da    PI: 7.7004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004978.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
      Aco004978.1 14 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding35.52.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Aco004978.1  69 GGFSEDEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.772966IPR017930Myb domain
SuperFamilySSF466891.96E-2611109IPR009057Homeodomain-like
SMARTSM007175.4E-131364IPR001005SANT/Myb domain
PfamPF002495.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-251569IPR009057Homeodomain-like
CDDcd001673.16E-101662No hitNo description
PROSITE profilePS5129415.17867117IPR017930Myb domain
SMARTSM007171.4E-1067115IPR001005SANT/Myb domain
PfamPF002495.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2270116IPR009057Homeodomain-like
CDDcd001676.85E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEDEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKFLGK  120
QRVKDHALPP LPRRAGLFGR KVEAKAETAE HGGFGSMASA EGVNRTGAVA GSFWPDPTAP  180
AYGPGHCNAY AAEDCHVSMR KLLLKLGGSY IAPPNALHPP QLAQLYDDQT TSSSLVAPSL  240
QVSSFEQEGL ILHGPNGFQT ELDEIFHFNQ VKLEGLDDCI YEDESTNMLC SNAPQSMSWN  300
DQVSPNLMYP NGMFQSYQGM QQCVLEEPVR LGMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091664.10.0protein ODORANT1-like
TrEMBLA0A199VNU50.0A0A199VNU5_ANACO; Transcription factor RAX3
STRINGXP_008796974.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-82myb domain protein 84