PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004914.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 334aa    MW: 36605.4 Da    PI: 4.4882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004914.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-102582981055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Aco004914.1 258 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 298
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14247314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12253308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-12257302No hitNo description
PfamPF000107.9E-8258298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSYEMEPTKV VSEINWSSYS PSMQSESEIM AQLLAPFPFQ CEPDNPDLGF GAPSFFWSGH  60
ATESYYCSEN SNPNVYYLSQ GEVSLSGSTS NSSFILPSSV YESCYVNGSN VALGINTCSE  120
PIDLNPLYGE EFIDLSEQTT QPKRKFPSVE EENFVDHGEF DSTAVSTKKK ARDSEKVQSA  180
KKGEVKRTAN SIQSGDDEAL HGQSCSSYGS DNDSNASQEM NGGGSTSSCS KGSSVLNLSG  240
KTRANRGSAT DPQSLYARKR RERINERLRI LQNLVPNGTK VDISTMLEEA VNYVKFLQLQ  300
IKLLSSDELW MYAPIAYNGM NIGIDLKMSP SQQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091823.10.0transcription factor bHLH84-like isoform X1
RefseqXP_020091824.10.0transcription factor bHLH84-like isoform X1
RefseqXP_020091825.10.0transcription factor bHLH84-like isoform X1
RefseqXP_020091826.10.0transcription factor bHLH84-like isoform X1
RefseqXP_020091827.10.0transcription factor bHLH84-like isoform X1
RefseqXP_020091828.10.0transcription factor bHLH84-like isoform X1
TrEMBLA0A2H3Y2X41e-97A0A2H3Y2X4_PHODC; transcription factor bHLH84-like
STRINGXP_008792628.12e-98(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-43bHLH family protein