PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 28105.2 Da PI: 6.5828 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk F + L H +H Aco004913.1 104 YKCSVCGKAFGSYQALGGHKASH 126 9*********9999998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.83E-10 | 104 | 126 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 104 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.9E-13 | 104 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.83E-10 | 163 | 190 | No hit | No description |
Pfam | PF13912 | 1.1E-13 | 167 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 168 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.066 | 168 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 190 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAIDALERTA IPPPPPPLST EEASEEEEEE EEEEEEEVFP PLEGWAKRKR SKRHSRFFPD 60 HRQPTEEEHL ALCLVMLARG GRYGPHRVSS PPPPQPPPPP PPQYKCSVCG KAFGSYQALG 120 GHKASHRKPI SGDDAPAAIA GAAATSAASG SGSSTGGGGG GGGSEKVHRC SVCSKTFPTG 180 QALGGHKRCH YEGTIGGGGG GGRSASATTV ASEGGSSSHR GFDLNVPAMP EGFEGAKRYF 240 AMAAAAAAAA AEEEEVQSPH PFKKPRLLIP A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 163 | SGSSTGGGGGGGGS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091531.1 | 0.0 | zinc finger protein 1-like | ||||
TrEMBL | A0A199VW34 | 1e-125 | A0A199VW34_ANACO; Zinc finger protein ZAT10 | ||||
STRING | XP_008792675.1 | 4e-78 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-35 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Aco004913.1 |