PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28426.4 Da PI: 9.6366 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.7 | 2.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ Aco004839.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 107.5 | 1.5e-35 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s++ + + ++++e++kLk+++e +q++qRhl+Ge+LesL+lkeLqqLeqqLe+slk+iRs+K++lll++i+el++kek+lqe+nkaL+k+l+e Aco004839.1 80 LVSADPESQGNWCHEYSKLKARVEAIQKSQRHLMGEQLESLNLKELQQLEQQLESSLKHIRSRKSQLLLDSISELKRKEKSLQEHNKALEKELME 174 5555666788*********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.997 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-34 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.98E-42 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-31 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.472 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYATD 60 SSMEKILERY ERYSYAEKAL VSADPESQGN WCHEYSKLKA RVEAIQKSQR HLMGEQLESL 120 NLKELQQLEQ QLESSLKHIR SRKSQLLLDS ISELKRKEKS LQEHNKALEK ELMEKQKALT 180 QQQHWEQQTQ PPTNSSSPLS FLLPTDSLPT LNIGTYQATG TGAEEVEGIA QPQARMGLPP 240 WMVRHLNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-23 | 1 | 84 | 1 | 83 | MEF2C |
5f28_B | 3e-23 | 1 | 84 | 1 | 83 | MEF2C |
5f28_C | 3e-23 | 1 | 84 | 1 | 83 | MEF2C |
5f28_D | 3e-23 | 1 | 84 | 1 | 83 | MEF2C |
6byy_A | 3e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 3e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 3e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 3e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6bz1_A | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-23 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091886.1 | 0.0 | MADS-box transcription factor 14 isoform X1 | ||||
Swissprot | Q10CQ1 | 1e-112 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A199VW00 | 1e-147 | A0A199VW00_ANACO; MADS-box transcription factor 14 | ||||
STRING | XP_008794203.1 | 1e-130 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 7e-74 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Aco004839.1 |