PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004647.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 366aa    MW: 40544.9 Da    PI: 8.9198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004647.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-08154201455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Aco004647.1 154 SHSLAERVRRERISERMRMLQGLVPGC----DKVTGKALMLDEIINYVQSLQ 201
                  8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-9148205No hitNo description
SuperFamilySSF474591.28E-16148217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-16150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-9156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGFFSFQHQN PFLLDSPIYD YPSHDETFKM QFLPAEQAED MGNNASSSIE CGSSSIGAST  60
PLIPSSPSSS LVAVPHPCER AAIIKPQDKK RKSRCGSSLS SSQSKESKES SKARKVRNEE  120
NKAKNGVKSE AKSSEEPPKG YIHVRARRGQ ATDSHSLAER VRRERISERM RMLQGLVPGC  180
DKVTGKALML DEIINYVQSL QNQVEFLSMK LASMSPILYG LGSDFDGLVD QAQGCSPNFE  240
KYSESMSVTI PCVHPETSPL QPIAFEGALG DYPMTSNSTS LSLQNQGPIS FSQVTLGEVS  300
VTRTLEIFSC KWVTKDRAFS TKWCSMTCAR FSRERKKRTS FNMQEALSIY VRTRAETVNV  360
QWKTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661881e-67AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087970.10.0transcription factor bHLH74-like
TrEMBLA0A199VSS51e-169A0A199VSS5_ANACO; Transcription factor bHLH137
STRINGXP_007137888.16e-66(Phaseolus vulgaris)
STRINGXP_008790706.13e-66(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-46bHLH family protein