PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004061.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 257aa    MW: 30072.3 Da    PI: 10.4294
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004061.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.1e-2083135456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++ +eq+++Le+ Fe+++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Aco004061.1  83 KRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWK 135
                  456889**********************************************9 PP
2HD-ZIP_I/II128.23.4e-4182173293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrl +eqv++LE+sFeee+kL perK++lar+LglqprqvavWFqnrRAR+k+kql++dy+aL++++dal+ + ++L++++++L++e+ke
  Aco004061.1  82 KKRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWKAKQLDHDYAALRSRHDALRLQCDALRRDKDALAAEIKE 173
                  9***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-1976139IPR009057Homeodomain-like
PROSITE profilePS5007117.11977137IPR001356Homeobox domain
SMARTSM003895.9E-1880141IPR001356Homeobox domain
CDDcd000864.95E-1482138No hitNo description
PfamPF000464.4E-1783135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-2085144IPR009057Homeodomain-like
PRINTSPR000313.3E-6108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000313.3E-6117133IPR000047Helix-turn-helix motif
PfamPF021835.7E-14137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLKWLRKGEG CWCWWWWWWW WRGFAAAEAA RNREKVGSLG KDDGAAEEEE GEEEEDQMVV  60
VGAGVIVNTK VMNMGVTTGV AKKRRLGTEQ VRALERSFEE ENKLGPERKA QLARDLGLQP  120
RQVAVWFQNR RARWKAKQLD HDYAALRSRH DALRLQCDAL RRDKDALAAE IKELKARLGN  180
SEMEEEEKEG KKMMEENMDR DKKSNKNKNK DKKSKNKKKV GRFLSKLIVG SERRRKQVDG  240
DQLFHSKTMK EKPSSKW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKAKQ
2216235KKKVGRFLSKLIVGSERRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6619971e-109KM661997.1 Ananas bracteatus clone 45223a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6K4989e-49HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH379e-49HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLI1QPP72e-46I1QPP7_ORYGL; Uncharacterized protein
STRINGORGLA09G0102600.13e-47(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.28e-34homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]