PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003613.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 343aa    MW: 38183.9 Da    PI: 6.9864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003613.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09174221455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L++l+P +    ++   Ka +L + ++Y++sLq
  Aco003613.1 174 SHSLAERVRREKINKRMKMLQSLVPGC----DGVSGKALMLDEIINYVQSLQ 221
                  8*************************9....78899***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.07E-11168225No hitNo description
SuperFamilySSF474592.09E-17168240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.345170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17170241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MELFSNQHHQ ASLLSPSNLP NSFMEKNFPP QQLGEMSNET SYCFPYCYLS EAIPEFSNNS  60
DSTARAYESS SSLDTVRNAS SAGTQMSHSA VITDPGSPSG KRRKNRDSTS LCLAPLSNDA  120
MESKTKKQKR PNGGLKKVEE KKPKGDEIKH KEVCGEPHEG YIHVRARRGQ ATDSHSLAER  180
VRREKINKRM KMLQSLVPGC DGVSGKALML DEIINYVQSL QNQVEFLSMK LASMNPMFDE  240
FGVDFECLMN HPEVARTKAK CQHTLLLIWP ISLGFDIDLT LYSMPHEQVP TVDQTNHSQA  300
TPSEATTVNY QMVDNSTPIL QHGQGPTYFP QEANSTRHKD GT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6617693e-86KM661769.1 Ananas bracteatus clone 44657a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106568.10.0transcription factor bHLH137-like
RefseqXP_020106569.10.0transcription factor bHLH137-like
RefseqXP_020106570.10.0transcription factor bHLH137-like
TrEMBLA0A2H3XZR48e-78A0A2H3XZR4_PHODC; transcription factor bHLH137-like
STRINGXP_008791059.12e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-49bHLH family protein