PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003224.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 602aa MW: 64519.1 Da PI: 6.3754

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003224.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.9e-08	202	230	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r +WT+eEd l+ av++ G g+W+ I + Aco003224.1 202 RRAWTEEEDMGLIAAVQKCGEGNWSDILK 230 679***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.23	197	254	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-12	198	253	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-11	200	251	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-5	201	252	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-6	202	230	IPR001005	SANT/Myb domain
CDD	cd11660	5.25E-13	203	251	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MAEEGKKRKG FINEDDASLL IQRYNSTTIL TLLQEVFRCA DGKMDWNTLV KQTSTGITSA 60 REYQMLWRHI AYKDALLEKL EDGAEPLDDD SDLDFELEAV PSRIHPVSAE DTLEVASCVK 120 ALTPSYSPPE LGVTYRTTVE SPLTSSIPND QITRVASNKQ QLARNIRGTK NAATLSNQKP 180 LQPAGSVGEA LDGSGPPKKK RRRAWTEEED MGLIAAVQKC GEGNWSDILK GEFKHDRDPQ 240 ELSQRWAVIR RKRLALLNQT SGGKVTSSAS PEERKAAQKA FSMALGFPMT RVSTPTLSGA 300 VQSITKSSSL STSSTLSEAM PASAAQSLNQ VQPTPNLITA SQKVPDPSNK TQAPLIKPLD 360 PTKAFIGPNA SIKAAAVAAG GRIATPSTAA SLLKAAQSKN AVHIKSHGQG LPKFPFASAK 420 PSPVSRTFEP QTVHARTLRP SLNSDPSATA LKGVSLGKQL QPIPLSSESN ASTSLQENKE 480 HNMDIVPAIG VDEFVKDAEL IILDNKGCAE HRSSGSGKND HESKESADGE MNYSETSNDP 540 TVVSQNPKTS DAGGAQNREE DIKEQLNEAS AVIQAMHNAS VQDQTLETVS QDNAIKSPAD 600 D*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MAEEGKKRKG FINEDDASLL IQRYNSTTIL TLLQEVFRCA DGKMDWNTLV KQTSTGITSA  60
REYQMLWRHI AYKDALLEKL EDGAEPLDDD SDLDFELEAV PSRIHPVSAE DTLEVASCVK  120
ALTPSYSPPE LGVTYRTTVE SPLTSSIPND QITRVASNKQ QLARNIRGTK NAATLSNQKP  180
LQPAGSVGEA LDGSGPPKKK RRRAWTEEED MGLIAAVQKC GEGNWSDILK GEFKHDRDPQ  240
ELSQRWAVIR RKRLALLNQT SGGKVTSSAS PEERKAAQKA FSMALGFPMT RVSTPTLSGA  300
VQSITKSSSL STSSTLSEAM PASAAQSLNQ VQPTPNLITA SQKVPDPSNK TQAPLIKPLD  360
PTKAFIGPNA SIKAAAVAAG GRIATPSTAA SLLKAAQSKN AVHIKSHGQG LPKFPFASAK  420
PSPVSRTFEP QTVHARTLRP SLNSDPSATA LKGVSLGKQL QPIPLSSESN ASTSLQENKE  480
HNMDIVPAIG VDEFVKDAEL IILDNKGCAE HRSSGSGKND HESKESADGE MNYSETSNDP  540
TVVSQNPKTS DAGGAQNREE DIKEQLNEAS AVIQAMHNAS VQDQTLETVS QDNAIKSPAD  600
D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	KKKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106617.1	0.0	uncharacterized protein LOC109722859

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4684	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58220.1	2e-48	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aco003224.1