PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003181.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 445aa    MW: 50895.2 Da    PI: 6.4745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003181.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.41.3e-25120217186
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +Wt+ +v++Li+a+++++e+ ++++           +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d ++
  Aco003181.1 120 KWTDAMVRLLITAVSYIGEDASADChiggrrkfailQKKGKWKAISKVMVERGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPALLDAMD 217
                  7**********************99999999999*9**********************************************669**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-21118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGNIQPGNM IPGSSYGVLD LQSSMDINHQ NPSHPLFHPP QQQPNNLGSA LNPSMNGTFP  60
LSMNHMPECN HQHGVLYMDY SKGERGKHSL SDEEDPSLME EGNDGHHEKG KKGSPWHRMK  120
WTDAMVRLLI TAVSYIGEDA SADCHIGGRR KFAILQKKGK WKAISKVMVE RGCYVSPQQC  180
EDKFNDLNKR YKRLTDILGR GTSCKVVENP ALLDAMDHIS DKLKDDVRKI LSSKHLFYEE  240
MCSYHNGNRL NLPHDLALQR SLQVALRSKD EQEMRRGANE DADEDDQSGD TEDEEDNNGE  300
HHVLHGDMGD SCFIKRMKHG MDNEDMAFAA NSSGSHDCAR KSPVMGITVD MNQAFPDGSN  360
FALSEKQLMS SHSIQLEEQR LHIQVQMLEL EKQRFKWERF SKKKDRELQK MRMENERMRL  420
DNERLAMELR HKEIELDLKL TRNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678081e-160KM667808.1 Ananas bracteatus clone 53254a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107064.10.0uncharacterized protein LOC109723194
TrEMBLA0A199VA920.0A0A199VA92_ANACO; Uncharacterized protein
STRINGXP_008781412.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-136sequence-specific DNA binding transcription factors