PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003174.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 441aa MW: 48574.1 Da PI: 5.2972

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003174.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	263.5	7.5e-81	75	437	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLl++A+av+s d +a+++L rl l +s + ++ Rla+yf+++L++r+ar+++ ++l +s+++ ++++a+++ +e+sP++kf+h+t Aco003174.1 75 DLLLAAAHAVESADSDRARSVLDRLDRLllaQSGSTGSFDRLAHYFARGLRSRMARHGPPNESKLGCSDSA-----HNMSAHQMVQELSPYVKFAHFT 167 79*********************9998544445589**************888877777777765.....78899999********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aNqaIlea++g+++vH+iDfd+++G+QWp+L+ L R +++ sl iT+v++ + + +++++tg+rL++fAe++g+ ++f+ + +++ dl e+++ Aco003174.1 168 ANQAILEATDGDDEVHVIDFDVMEGIQWPPLMADLVGR-GPASSLLITAVVK-DGDAVDSVRRTGRRLSEFAESIGLMLHFDWISMNDGGDL--ERIE 261 *********************************9.8999*****.55699*********************988877777..8889 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse...sFlerflealeyysalfdsleaklpres.eerikvEre 288 ++++ +l+V+++++ + +++s +s +++L vk+lsP++vv+ve e+ + +++ sF f+eal+++sa dsl +++ + vEre Aco003174.1 262 LNSKRTLIVSCMMHQVQCPSRSY--RS-LKSFLLGVKKLSPRLVVLVEDELFRcSKSafdSFSGFFCEALHHFSATADSLGSSFCGGYkMGLRIVERE 356 99999****8888885544..44.559***************5553443455999*************66665555267789 PP GRAS 289 llgreivnvvacegaerrerhetlekWr...erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +lg++i++ v + ekW + GF+p+p+s +++qak l+ ++ +gy v++e g l l+Wk+rpL++vS+W Aco003174.1 357 MLGPKIEDFVGRVEYG------PGEKWAlgeGLHGFEGFRPIPVSGCNVSQAKFLVGLFN-RGYGVKHEMGRLALCWKSRPLTTVSVW 437 ******988876......67788622134445799*****************.************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.963	47	419	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-78	75	437	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEAIAYPQTP LFSFSTEHDE SISDDPVGCT DPTVHTYLGE EHPHANWLFE GPVLSLEDNL 60 VAIQEELMEE NSSSDLLLAA AHAVESADSD RARSVLDRLD RLLLAQSGST GSFDRLAHYF 120 ARGLRSRMAR HGPPNESKLG CSDSAHNMSA HQMVQELSPY VKFAHFTANQ AILEATDGDD 180 EVHVIDFDVM EGIQWPPLMA DLVGRGPASS LLITAVVKDG DAVDSVRRTG RRLSEFAESI 240 GLMLHFDWIS MNDGGDLERI ELNSKRTLIV SCMMHQVQCP SRSYRSLKSF LLGVKKLSPR 300 LVVLVEDELF RCSKSAFDSF SGFFCEALHH FSATADSLGS SFCGGYKMGL RIVEREMLGP 360 KIEDFVGRVE YGPGEKWALG EGLHGFEGFR PIPVSGCNVS QAKFLVGLFN RGYGVKHEMG 420 RLALCWKSRP LTTVSVWVPA *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEAIAYPQTP LFSFSTEHDE SISDDPVGCT DPTVHTYLGE EHPHANWLFE GPVLSLEDNL  60
VAIQEELMEE NSSSDLLLAA AHAVESADSD RARSVLDRLD RLLLAQSGST GSFDRLAHYF  120
ARGLRSRMAR HGPPNESKLG CSDSAHNMSA HQMVQELSPY VKFAHFTANQ AILEATDGDD  180
EVHVIDFDVM EGIQWPPLMA DLVGRGPASS LLITAVVKDG DAVDSVRRTG RRLSEFAESI  240
GLMLHFDWIS MNDGGDLERI ELNSKRTLIV SCMMHQVQCP SRSYRSLKSF LLGVKKLSPR  300
LVVLVEDELF RCSKSAFDSF SGFFCEALHH FSATADSLGS SFCGGYKMGL RIVEREMLGP  360
KIEDFVGRVE YGPGEKWALG EGLHGFEGFR PIPVSGCNVS QAKFLVGLFN RGYGVKHEMG  420
RLALCWKSRP LTTVSVWVPA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-43	81	439	27	380	Protein SCARECROW
5b3h_A	6e-43	81	439	26	379	Protein SCARECROW
5b3h_D	6e-43	81	439	26	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107062.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A199W594	0.0	A0A199W594_ANACO; Nodulation-signaling pathway 2 protein
STRING	XP_008781634.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7684	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	2e-51	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco003174.1